Index

A

addAssociatedImage() (large_image_source_zarr.ZarrFileTileSource method) addKnownExtensions() (large_image_source_bioformats.BioformatsFileTileSource class method) (large_image_source_gdal.GDALFileTileSource class method) (large_image_source_pil.PILFileTileSource class method) (large_image_source_rasterio.RasterioFileTileSource class method) (large_image_source_tifffile.TifffileFileTileSource class method) (large_image_source_vips.VipsFileTileSource class method) addPILFormatsToOutputOptions() (in module large_image.tilesource.utilities) addSettingsToConfig() (in module girder_large_image) addStyle() (large_image_source_mapnik.MapnikFileTileSource method) addSystemEndpoints() (in module girder_large_image.rest) addTile() (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) addTilesThumbnails() (girder_large_image.rest.tiles.TilesItemResource method) adjust_params() (in module large_image_converter.format_aperio) adjustConfigForUser() (in module girder_large_image)

allowedTypes (girder_large_image_annotation.utils.PlottableItemData attribute) Annotation (class in girder_large_image_annotation.models.annotation) annotation (girder_large_image_annotation.utils.GeoJSONAnnotation property) Annotation.Skill (class in girder_large_image_annotation.models.annotation) Annotationelement (class in girder_large_image_annotation.models.annotationelement) annotationElementSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) AnnotationGeoJSON (class in girder_large_image_annotation.utils) AnnotationResource (class in girder_large_image_annotation.rest.annotation) AnnotationSchema (class in girder_large_image_annotation.models.annotation) annotationSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) annotationToJSON() (girder_large_image_annotation.utils.GeoJSONAnnotation method) arrowShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) as_leaflet_layer() (large_image.tilesource.jupyter.IPyLeafletMixin method) assetstore_meta (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter property) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter property) auth_session (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter property) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter property)

B

bandCount (large_image.tilesource.base.TileSource property) (large_image.tilesource.TileSource property) bandFormat (large_image_source_vips.VipsFileTileSource property) bandRanges (large_image_source_vips.VipsFileTileSource property) BaseCache (class in large_image.cache_util.base) baseElementSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

baseFields (girder_large_image_annotation.models.annotation.Annotation attribute) baseRectangleShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) baseShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) bboxKeys (girder_large_image_annotation.models.annotationelement.Annotationelement attribute) BioformatsFileTileSource (class in large_image_source_bioformats) BioformatsGirderTileSource (class in large_image_source_bioformats.girder_source)

C

cache_histograms_job() (in module large_image_tasks.tasks) cache_tile_frames_job() (in module large_image_tasks.tasks) cacheClear() (girder_large_image.rest.large_image_resource.LargeImageResource method) CacheFactory (class in large_image.cache_util) (class in large_image.cache_util.cachefactory) cacheInfo() (girder_large_image.rest.large_image_resource.LargeImageResource method) cacheName (large_image_source_bioformats.BioformatsFileTileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.DeepzoomFileTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.DICOMFileTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_multi.MultiFileTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_nd2.ND2FileTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_ometiff.OMETiffFileTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openjpeg.OpenjpegFileTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_openslide.OpenslideFileTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_pil.PILFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tiff.TiffFileTileSource attribute) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_tifffile.TifffileFileTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_vips.VipsFileTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) (large_image_source_zarr.ZarrFileTileSource attribute) canCreateFolderAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) canRead() (in module large_image.tilesource) (in module large_image_source_bioformats) (in module large_image_source_deepzoom) (in module large_image_source_dicom) (in module large_image_source_dummy) (in module large_image_source_gdal) (in module large_image_source_mapnik) (in module large_image_source_multi) (in module large_image_source_nd2) (in module large_image_source_ometiff) (in module large_image_source_openjpeg) (in module large_image_source_openslide) (in module large_image_source_pil) (in module large_image_source_rasterio) (in module large_image_source_test) (in module large_image_source_tiff) (in module large_image_source_tifffile) (in module large_image_source_vips) (in module large_image_source_zarr) (large_image.tilesource.base.FileTileSource class method) (large_image.tilesource.base.TileSource class method) (large_image.tilesource.FileTileSource class method) (large_image.tilesource.TileSource class method) (large_image_source_dummy.DummyTileSource class method) (large_image_source_test.TestTileSource class method)

channelColors (large_image_source_zarr.ZarrFileTileSource property) channelNames (large_image_source_zarr.ZarrFileTileSource property) checkForLargeImageFiles() (in module girder_large_image) checkForMissingDataHandler (class in large_image_source_tifffile) circleShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) circleType() (girder_large_image_annotation.utils.AnnotationGeoJSON method) (girder_large_image_annotation.utils.GeoJSONAnnotation method) classCaches (large_image.cache_util.cache.LruCacheMetaclass attribute) (large_image.cache_util.LruCacheMetaclass attribute) clear() (large_image.cache_util.base.BaseCache method) (large_image.cache_util.MemCache method) (large_image.cache_util.memcache.MemCache method) (large_image.cache_util.RedisCache method) (large_image.cache_util.rediscache.RedisCache method) CLIENT_SOURCE_PATH (girder_large_image.LargeImagePlugin attribute) (girder_large_image_annotation.LargeImageAnnotationPlugin attribute) (large_image_source_dicom.girder_plugin.DICOMwebPlugin attribute) colorRangeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) colorSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) columns (girder_large_image_annotation.utils.PlottableItemData property) commonColumns (girder_large_image_annotation.utils.PlottableItemData attribute) computeColumns (girder_large_image_annotation.utils.PlottableItemData attribute) configFormat() (girder_large_image.rest.large_image_resource.LargeImageResource method) configReplace() (girder_large_image.rest.large_image_resource.LargeImageResource method) configValidate() (girder_large_image.rest.large_image_resource.LargeImageResource method) convert() (in module large_image_converter) convert_image_job() (in module large_image_tasks.tasks) convertImage() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) convertRegionScale() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) coordSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) coordValueSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) copyAnnotation() (girder_large_image_annotation.rest.annotation.AnnotationResource method) CoreFunctions (large_image_source_tiff.tiff_reader.TiledTiffDirectory attribute) countAssociatedImages() (girder_large_image.rest.large_image_resource.LargeImageResource method) countElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method) countHistograms() (girder_large_image.rest.large_image_resource.LargeImageResource method) countThumbnails() (girder_large_image.rest.large_image_resource.LargeImageResource method) cpu_count() (in module large_image.config) create_thumbnail_and_label() (in module large_image_converter.format_aperio) createAnnotation() (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.rest.annotation.AnnotationResource method) createImageItem() (girder_large_image.models.image_item.ImageItem method) createItemAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) createLargeImages() (girder_large_image.rest.large_image_resource.LargeImageResource method) createThumbnails() (girder_large_image.rest.large_image_resource.LargeImageResource method) createThumbnailsJob() (in module girder_large_image.rest.large_image_resource) createThumbnailsJobLog() (in module girder_large_image.rest.large_image_resource) createThumbnailsJobTask() (in module girder_large_image.rest.large_image_resource) createThumbnailsJobThread() (in module girder_large_image.rest.large_image_resource) createTiles() (girder_large_image.rest.tiles.TilesItemResource method) crop (large_image_source_vips.VipsFileTileSource property) (large_image_source_zarr.ZarrFileTileSource property) curritems (large_image.cache_util.base.BaseCache property) (large_image.cache_util.MemCache property) (large_image.cache_util.memcache.MemCache property) (large_image.cache_util.RedisCache property) (large_image.cache_util.rediscache.RedisCache property) currsize (large_image.cache_util.base.BaseCache property) (large_image.cache_util.MemCache property) (large_image.cache_util.memcache.MemCache property) (large_image.cache_util.RedisCache property) (large_image.cache_util.rediscache.RedisCache property) cursorNextOrNone() (in module girder_large_image.rest.large_image_resource)

D

data() (girder_large_image_annotation.utils.PlottableItemData method) datafileAnnotationElementSelector() (girder_large_image_annotation.utils.PlottableItemData method) DeepzoomFileTileSource (class in large_image_source_deepzoom) DeepzoomGirderTileSource (class in large_image_source_deepzoom.girder_source) defaultMaxSize() (large_image_source_pil.girder_source.PILGirderTileSource method) (large_image_source_pil.PILFileTileSource method) delete() (girder_large_image.models.image_item.ImageItem method) deleteAnnotation() (girder_large_image_annotation.rest.annotation.AnnotationResource method) deleteAssociatedImages() (girder_large_image.rest.large_image_resource.LargeImageResource method) deleteFile() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) deleteFolderAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) deleteHistograms() (girder_large_image.rest.large_image_resource.LargeImageResource method) deleteIncompleteTiles() (girder_large_image.rest.large_image_resource.LargeImageResource method) deleteItemAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) deleteMetadata() (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.rest.annotation.AnnotationResource method) deleteMetadataKey() (girder_large_image.rest.item_meta.InternalMetadataItemResource method) deleteOldAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) deleteThumbnails() (girder_large_image.rest.large_image_resource.LargeImageResource method) deleteTiles() (girder_large_image.rest.tiles.TilesItemResource method)

deleteTilesThumbnails() (girder_large_image.rest.tiles.TilesItemResource method) dicom_key_to_tag() (in module large_image_source_dicom.dicom_tags) dicom_to_dict() (in module large_image_source_dicom) DICOMFileTileSource (class in large_image_source_dicom) DICOMGirderTileSource (class in large_image_source_dicom.girder_source) DICOMwebAssetstoreAdapter (class in large_image_source_dicom.assetstore) (class in large_image_source_dicom.assetstore.dicomweb_assetstore_adapter) DICOMwebAssetstoreResource (class in large_image_source_dicom.assetstore.rest) DICOMwebPlugin (class in large_image_source_dicom.girder_plugin) dictToEtree() (in module large_image.tilesource) (in module large_image.tilesource.utilities) diffObj() (in module large_image_source_nd2) DISPLAY_NAME (girder_large_image.LargeImagePlugin attribute) (girder_large_image_annotation.LargeImageAnnotationPlugin attribute) (large_image_source_dicom.girder_plugin.DICOMwebPlugin attribute) downloadFile() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) downsampleTileHalfRes() (in module large_image.tilesource.resample) dtype (large_image.tilesource.base.TileSource property) (large_image.tilesource.TileSource property) DummyTileSource (class in large_image_source_dummy)

E

elementCount (girder_large_image_annotation.utils.GeoJSONAnnotation property) elements (girder_large_image_annotation.utils.GeoJSONAnnotation property) elementToGeoJSON() (girder_large_image_annotation.utils.AnnotationGeoJSON method) ellipseShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) ellipseType() (girder_large_image_annotation.utils.AnnotationGeoJSON method) (girder_large_image_annotation.utils.GeoJSONAnnotation method) emit() (large_image_source_tifffile.checkForMissingDataHandler method) (large_image_tasks.tasks.JobLogger method) et_findall() (in module large_image_source_tifffile) etreeToDict() (in module large_image.tilesource) (in module large_image.tilesource.utilities) existFolderAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) EXPERT (girder_large_image_annotation.models.annotation.Annotation.Skill attribute) extendSchema() (in module girder_large_image_annotation.models.annotation) extensions (large_image.tilesource.base.TileSource attribute) (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.BioformatsFileTileSource attribute) (large_image_source_deepzoom.DeepzoomFileTileSource attribute) (large_image_source_dicom.DICOMFileTileSource attribute) (large_image_source_dummy.DummyTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.MultiFileTileSource attribute) (large_image_source_nd2.ND2FileTileSource attribute) (large_image_source_ometiff.OMETiffFileTileSource attribute) (large_image_source_openjpeg.OpenjpegFileTileSource attribute) (large_image_source_openslide.OpenslideFileTileSource attribute) (large_image_source_pil.PILFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.TiffFileTileSource attribute) (large_image_source_tifffile.TifffileFileTileSource attribute) (large_image_source_vips.VipsFileTileSource attribute) (large_image_source_zarr.ZarrFileTileSource attribute)

extensionsWithAdjacentFiles (girder_large_image.girder_tilesource.GirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) extract_dicom_metadata() (in module large_image_source_dicom.dicom_metadata) extract_specimen_metadata() (in module large_image_source_dicom.dicom_metadata)

F

FALLBACK (large_image.constants.SourcePriority attribute) FALLBACK_HIGH (large_image.constants.SourcePriority attribute) FileTileSource (class in large_image.tilesource) (class in large_image.tilesource.base) finalizeUpload() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) find() (girder_large_image_annotation.rest.annotation.AnnotationResource method) findAnnotatedImages() (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.rest.annotation.AnnotationResource method)

format_hook() (in module large_image_converter) fractalTile() (large_image_source_test.TestTileSource method) frameAxes (large_image_source_zarr.ZarrFileTileSource property) frames (large_image.tilesource.base.TileSource property) (large_image.tilesource.TileSource property) frameUnits (large_image_source_zarr.ZarrFileTileSource property) frameValues (large_image_source_zarr.ZarrFileTileSource property) from_map() (large_image.tilesource.jupyter.Map method) fullAlphaValue() (in module large_image.tilesource.utilities)

G

GDALBaseFileTileSource (class in large_image.tilesource.geo) GDALFileTileSource (class in large_image_source_gdal) GDALGirderTileSource (class in large_image_source_gdal.girder_source) GeoBaseFileTileSource (class in large_image.tilesource.geo) geojson (girder_large_image_annotation.utils.AnnotationGeoJSON property) geojson() (girder_large_image_annotation.models.annotation.Annotation method) GeoJSONAnnotation (class in girder_large_image_annotation.utils) geospatial (large_image.tilesource.base.TileSource property) (large_image.tilesource.geo.GDALBaseFileTileSource property) (large_image.tilesource.TileSource property) (large_image_source_gdal.GDALFileTileSource property) get_dicomweb_metadata() (in module large_image_source_dicom.dicomweb_utils) get_first_wsi_volume_metadata() (in module large_image_source_dicom.dicomweb_utils) getAndCacheImageOrDataRun() (girder_large_image.models.image_item.ImageItem method) getAnnotation() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAnnotationAccess() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAnnotationHistory() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAnnotationHistoryList() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAnnotationSchema() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAnnotationWithFormat() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getAssociatedImage() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_multi.MultiFileTileSource method) getAssociatedImageMetadata() (girder_large_image.rest.tiles.TilesItemResource method) getAssociatedImagesList() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_bioformats.BioformatsFileTileSource method) (large_image_source_dicom.DICOMFileTileSource method) (large_image_source_multi.MultiFileTileSource method) (large_image_source_openjpeg.OpenjpegFileTileSource method) (large_image_source_openslide.OpenslideFileTileSource method) (large_image_source_tiff.TiffFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) getAvailableNamedPalettes() (in module large_image.tilesource.utilities) getBandInformation() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) getBounds() (large_image.tilesource.base.TileSource method) (large_image.tilesource.geo.GDALBaseFileTileSource method) (large_image.tilesource.TileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) getCache() (large_image.cache_util.base.BaseCache static method) (large_image.cache_util.CacheFactory method) (large_image.cache_util.cachefactory.CacheFactory method) (large_image.cache_util.MemCache static method) (large_image.cache_util.memcache.MemCache static method) (large_image.cache_util.RedisCache static method) (large_image.cache_util.rediscache.RedisCache static method) getCacheSize() (large_image.cache_util.CacheFactory method) (large_image.cache_util.cachefactory.CacheFactory method) getCenter() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getConfig() (in module large_image.config) getCrs() (large_image_source_rasterio.RasterioFileTileSource method) getDZIInfo() (girder_large_image.rest.tiles.TilesItemResource method) getDZITile() (girder_large_image.rest.tiles.TilesItemResource method) getElementGroupSet() (girder_large_image_annotation.models.annotationelement.Annotationelement method) getElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method) getFileSize() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) getFirstAvailableCache() (in module large_image.cache_util.cachefactory) getFolderAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getGirderTileSource() (in module girder_large_image.girder_tilesource) getGirderTileSourceName() (in module girder_large_image.girder_tilesource) getHexColors() (large_image.tilesource.geo.GDALBaseFileTileSource static method) getHistogram() (girder_large_image.rest.tiles.TilesItemResource method) getICCProfiles() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getInternalMetadata() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_bioformats.BioformatsFileTileSource method) (large_image_source_deepzoom.DeepzoomFileTileSource method) (large_image_source_dicom.DICOMFileTileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_multi.MultiFileTileSource method) (large_image_source_nd2.ND2FileTileSource method) (large_image_source_ometiff.OMETiffFileTileSource method) (large_image_source_openjpeg.OpenjpegFileTileSource method) (large_image_source_openslide.OpenslideFileTileSource method) (large_image_source_pil.PILFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) (large_image_source_test.TestTileSource method) (large_image_source_tiff.TiffFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) getItemAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getItemListAnnotationCounts() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getItemPlottableData() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getItemPlottableElements() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getLevelForMagnification() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getLogger() (in module large_image.config) getLRUHash() (girder_large_image.girder_tilesource.GirderTileSource static method) (large_image.tilesource.base.FileTileSource static method) (large_image.tilesource.base.TileSource static method) (large_image.tilesource.FileTileSource static method) (large_image.tilesource.TileSource static method) (large_image_source_gdal.GDALFileTileSource static method) (large_image_source_gdal.girder_source.GDALGirderTileSource static method) (large_image_source_pil.girder_source.PILGirderTileSource static method) (large_image_source_pil.PILFileTileSource static method) (large_image_source_rasterio.girder_source.RasterioGirderTileSource static method) (large_image_source_rasterio.RasterioFileTileSource static method) (large_image_source_test.TestTileSource static method) getMagnificationForLevel() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getMaxSize() (in module large_image_source_pil) getMetadata() (girder_large_image.models.image_item.ImageItem method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_bioformats.BioformatsFileTileSource method) (large_image_source_dicom.DICOMFileTileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_multi.MultiFileTileSource method) (large_image_source_nd2.ND2FileTileSource method) (large_image_source_ometiff.OMETiffFileTileSource method) (large_image_source_pil.PILFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) (large_image_source_test.TestTileSource method) (large_image_source_tiff.TiffFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) getMetadataKey() (girder_large_image.rest.item_meta.InternalMetadataItemResource method) getNativeMagnification() (large_image.tilesource.base.TileSource method) (large_image.tilesource.geo.GDALBaseFileTileSource method) (large_image.tilesource.TileSource method) (large_image_source_bioformats.BioformatsFileTileSource method) (large_image_source_dicom.DICOMFileTileSource method) (large_image_source_multi.MultiFileTileSource method) (large_image_source_nd2.ND2FileTileSource method) (large_image_source_ometiff.OMETiffFileTileSource method) (large_image_source_openjpeg.OpenjpegFileTileSource method) (large_image_source_openslide.OpenslideFileTileSource method) (large_image_source_tiff.TiffFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method)

getNextVersionValue() (girder_large_image_annotation.models.annotationelement.Annotationelement method) getOldAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) getOneBandInformation() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_mapnik.MapnikFileTileSource method) getPaletteColors() (in module large_image.tilesource.utilities) getPixel() (girder_large_image.models.image_item.ImageItem method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) getPixelSizeInMeters() (large_image.tilesource.geo.GDALBaseFileTileSource method) getPointAtAnotherScale() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getPreferredLevel() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_ometiff.OMETiffFileTileSource method) (large_image_source_openslide.OpenslideFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) getProj4String() (large_image_source_gdal.GDALFileTileSource method) getPublicSettings() (girder_large_image.rest.large_image_resource.LargeImageResource method) getRegion() (girder_large_image.models.image_item.ImageItem method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) getRegionAtAnotherScale() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getSingleTile() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getSingleTileAtAnotherScale() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getSourceNameFromDict() (in module large_image.tilesource) getState() (girder_large_image.girder_tilesource.GirderTileSource method) (large_image.tilesource.base.FileTileSource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.FileTileSource method) (large_image.tilesource.TileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_pil.girder_source.PILGirderTileSource method) (large_image_source_pil.PILFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) (large_image_source_test.TestTileSource method) (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) getTestTile() (girder_large_image.rest.tiles.TilesItemResource method) getTestTilesInfo() (girder_large_image.rest.tiles.TilesItemResource method) getThumbnail() (girder_large_image.models.image_item.ImageItem method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.geo.GDALBaseFileTileSource method) (large_image.tilesource.TileSource method) getTiffDir() (large_image_source_tiff.TiffFileTileSource method) getTile() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) (large_image_source_bioformats.BioformatsFileTileSource method) (large_image_source_deepzoom.DeepzoomFileTileSource method) (large_image_source_dicom.DICOMFileTileSource method) (large_image_source_dummy.DummyTileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_mapnik.MapnikFileTileSource method) (large_image_source_multi.MultiFileTileSource method) (large_image_source_nd2.ND2FileTileSource method) (large_image_source_ometiff.OMETiffFileTileSource method) (large_image_source_openjpeg.OpenjpegFileTileSource method) (large_image_source_openslide.OpenslideFileTileSource method) (large_image_source_pil.girder_source.PILGirderTileSource method) (large_image_source_pil.PILFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) (large_image_source_test.TestTileSource method) (large_image_source_tiff.tiff_reader.TiledTiffDirectory method) (large_image_source_tiff.TiffFileTileSource method) (large_image_source_tifffile.TifffileFileTileSource method) (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method) getTileCache() (in module large_image.cache_util) (in module large_image.cache_util.cache) getTileCorners() (large_image.tilesource.geo.GDALBaseFileTileSource method) getTileCount() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getTileFramesQuadInfo() (in module large_image.tilesource.utilities) getTileIOTiffError() (large_image_source_tiff.TiffFileTileSource method) getTileMimeType() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) getTilesInfo() (girder_large_image.rest.tiles.TilesItemResource method) getTileSource() (in module large_image.tilesource) getTilesPixel() (girder_large_image.rest.tiles.TilesItemResource method) getTilesRegion() (girder_large_image.rest.tiles.TilesItemResource method) getTilesThumbnail() (girder_large_image.rest.tiles.TilesItemResource method) getTileWithFrame() (girder_large_image.rest.tiles.TilesItemResource method) getVersion() (girder_large_image_annotation.models.annotation.Annotation method) getYAMLConfigFile() (in module girder_large_image.rest) girder_large_image module girder_large_image.constants module girder_large_image.girder_tilesource module girder_large_image.loadmodelcache module girder_large_image.models module girder_large_image.models.image_item module girder_large_image.rest module girder_large_image.rest.item_meta module girder_large_image.rest.large_image_resource module girder_large_image.rest.tiles module girder_large_image_annotation module girder_large_image_annotation.constants module girder_large_image_annotation.handlers module girder_large_image_annotation.models module girder_large_image_annotation.models.annotation module girder_large_image_annotation.models.annotationelement module girder_large_image_annotation.rest module girder_large_image_annotation.rest.annotation module girder_large_image_annotation.utils module girderSource (girder_large_image.girder_tilesource.GirderTileSource attribute) GirderTileSource (class in girder_large_image.girder_tilesource) griddataSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) groupSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

H

handleCopyItem() (in module girder_large_image) handleFileSave() (in module girder_large_image) handleRemoveFile() (in module girder_large_image) handleSettingSave() (in module girder_large_image) heatmapSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

HIGH (large_image.constants.SourcePriority attribute) HIGHER (large_image.constants.SourcePriority attribute) histogram() (girder_large_image.models.image_item.ImageItem method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) histogramThreshold() (in module large_image.tilesource.utilities)

I

id (large_image.tilesource.jupyter.Map property) idRegex (girder_large_image_annotation.models.annotation.Annotation attribute) ImageBytes (class in large_image.tilesource.utilities) imageDescription (large_image_source_zarr.ZarrFileTileSource property) imageHeight (large_image_source_tiff.tiff_reader.TiledTiffDirectory property) ImageItem (class in girder_large_image.models.image_item) imageWidth (large_image_source_tiff.tiff_reader.TiledTiffDirectory property) IMPLICIT (large_image.constants.SourcePriority attribute) IMPLICIT_HIGH (large_image.constants.SourcePriority attribute) importData() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.rest.DICOMwebAssetstoreResource method) initialize() (girder_large_image.models.image_item.ImageItem method) (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.models.annotationelement.Annotationelement method) initUpload() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) injectAnnotationGroupSet() (girder_large_image_annotation.models.annotation.Annotation method)

InternalMetadataItemResource (class in girder_large_image.rest.item_meta) interpolateMinMax() (large_image_source_mapnik.MapnikFileTileSource static method) invalidateLoadModelCache() (in module girder_large_image.loadmodelcache) InvalidOperationTiffError IOOpenTiffError IOTiffError iplmap (large_image.tilesource.jupyter.IPyLeafletMixin property) IPyLeafletMixin (class in large_image.tilesource.jupyter) is_geospatial() (in module large_image_converter) is_vips() (in module large_image_converter) isGeoJSON() (in module girder_large_image_annotation.utils) isGeospatial() (large_image.tilesource.geo.GDALBaseFileTileSource static method) (large_image_source_gdal.GDALFileTileSource static method) (large_image_source_rasterio.RasterioFileTileSource static method) isTileCacheSetup() (in module large_image.cache_util) (in module large_image.cache_util.cache) isValidPalette() (in module large_image.tilesource.utilities) itemNameIDSelector() (girder_large_image_annotation.utils.PlottableItemData method)

J

JobLogger (class in large_image_tasks.tasks) json_serial() (in module large_image_converter)

JSONDict (class in large_image.tilesource.utilities) JUPYTER_HOST (large_image.tilesource.jupyter.IPyLeafletMixin attribute) JUPYTER_PROXY (large_image.tilesource.jupyter.IPyLeafletMixin attribute)

K

keySelector() (girder_large_image_annotation.utils.PlottableItemData static method)

L

labelSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) large_image module large_image.cache_util module large_image.cache_util.base module large_image.cache_util.cache module large_image.cache_util.cachefactory module large_image.cache_util.memcache module large_image.cache_util.rediscache module large_image.config module large_image.constants module large_image.exceptions module large_image.tilesource module large_image.tilesource.base module large_image.tilesource.geo module large_image.tilesource.jupyter module large_image.tilesource.resample module large_image.tilesource.stylefuncs module large_image.tilesource.tiledict module large_image.tilesource.tileiterator module large_image.tilesource.utilities module LARGE_IMAGE_AUTO_SET (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_AUTO_USE_ALL_FILES (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_CONFIG_FOLDER (girder_large_image.constants.PluginSettings attribute) large_image_converter module large_image_converter.format_aperio module LARGE_IMAGE_DEFAULT_VIEWER (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_ICC_CORRECTION (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_MAX_SMALL_IMAGE_SIZE (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_MAX_THUMBNAIL_FILES (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_NOTIFICATION_STREAM_FALLBACK (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_EXTRA (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_EXTRA_ADMIN (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_EXTRA_PUBLIC (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_ITEM_EXTRA (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_ITEM_EXTRA_ADMIN (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_ITEM_EXTRA_PUBLIC (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_THUMBNAILS (girder_large_image.constants.PluginSettings attribute) LARGE_IMAGE_SHOW_VIEWER (girder_large_image.constants.PluginSettings attribute) large_image_source_bioformats module large_image_source_bioformats.girder_source module large_image_source_deepzoom module large_image_source_deepzoom.girder_source module large_image_source_dicom module large_image_source_dicom.assetstore module large_image_source_dicom.assetstore.dicomweb_assetstore_adapter module large_image_source_dicom.assetstore.rest module large_image_source_dicom.dicom_metadata module large_image_source_dicom.dicom_tags module large_image_source_dicom.dicomweb_utils module large_image_source_dicom.girder_plugin module large_image_source_dicom.girder_source module large_image_source_dummy module large_image_source_gdal module large_image_source_gdal.girder_source module large_image_source_mapnik module large_image_source_mapnik.girder_source module large_image_source_multi module large_image_source_multi.girder_source module

large_image_source_nd2 module large_image_source_nd2.girder_source module large_image_source_ometiff module large_image_source_ometiff.girder_source module large_image_source_openjpeg module large_image_source_openjpeg.girder_source module large_image_source_openslide module large_image_source_openslide.girder_source module large_image_source_pil module large_image_source_pil.girder_source module large_image_source_rasterio module large_image_source_rasterio.girder_source module large_image_source_test module large_image_source_tiff module large_image_source_tiff.exceptions module large_image_source_tiff.girder_source module large_image_source_tiff.tiff_reader module large_image_source_tifffile module large_image_source_tifffile.girder_source module large_image_source_vips module large_image_source_vips.girder_source module large_image_source_zarr module large_image_source_zarr.girder_source module large_image_tasks module large_image_tasks.tasks module LargeImageAnnotationPlugin (class in girder_large_image_annotation) LargeImagePlugin (class in girder_large_image) LargeImageResource (class in girder_large_image.rest.large_image_resource) LargeImageTasks (class in large_image_tasks) launch_tile_server() (in module large_image.tilesource.jupyter) layer (large_image.tilesource.jupyter.Map property) LazyTileDict (class in large_image.tilesource.tiledict) levels (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) linestringType() (girder_large_image_annotation.utils.GeoJSONAnnotation method) listExtensions() (in module large_image.tilesource) listMimeTypes() (in module large_image.tilesource) listSources() (girder_large_image.rest.large_image_resource.LargeImageResource method) (in module large_image.tilesource) listTilesThumbnails() (girder_large_image.rest.tiles.TilesItemResource method) load() (girder_large_image.LargeImagePlugin method) (girder_large_image_annotation.LargeImageAnnotationPlugin method) (girder_large_image_annotation.models.annotation.Annotation method) (in module large_image_source_dicom.assetstore) (large_image_source_dicom.girder_plugin.DICOMwebPlugin method) loadCaches() (in module large_image.cache_util.cachefactory) loadGirderTileSources() (in module girder_large_image.girder_tilesource) loadModel() (in module girder_large_image.loadmodelcache) logError() (large_image.cache_util.base.BaseCache method) logged (large_image.cache_util.CacheFactory attribute) (large_image.cache_util.cachefactory.CacheFactory attribute) LOW (large_image.constants.SourcePriority attribute) LOWER (large_image.constants.SourcePriority attribute) LruCacheMetaclass (class in large_image.cache_util) (class in large_image.cache_util.cache)

M

make_crs() (in module large_image_source_rasterio) make_layer() (large_image.tilesource.jupyter.Map method) make_map() (large_image.tilesource.jupyter.Map method) make_vsi() (in module large_image.tilesource.geo) MANUAL (large_image.constants.SourcePriority attribute) Map (class in large_image.tilesource.jupyter) map (large_image.tilesource.jupyter.Map property) MapnikFileTileSource (class in large_image_source_mapnik) MapnikGirderTileSource (class in large_image_source_mapnik.girder_source) maskPixelValues() (in module large_image.tilesource.stylefuncs) maxAnnotationElements (girder_large_image_annotation.utils.PlottableItemData attribute) maxDistinct (girder_large_image_annotation.utils.PlottableItemData attribute) maxItems (girder_large_image_annotation.utils.PlottableItemData attribute) maxsize (large_image.cache_util.base.BaseCache property) (large_image.cache_util.MemCache property) (large_image.cache_util.memcache.MemCache property) (large_image.cache_util.RedisCache property) (large_image.cache_util.rediscache.RedisCache property) mayHaveAdjacentFiles() (girder_large_image.girder_tilesource.GirderTileSource method) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource method) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource method) medianFilter() (in module large_image.tilesource.stylefuncs) MEDIUM (large_image.constants.SourcePriority attribute) MemCache (class in large_image.cache_util) (class in large_image.cache_util.memcache) metadata (large_image.tilesource.base.TileSource property) (large_image.tilesource.jupyter.Map property) (large_image.tilesource.TileSource property) metadataSearchHandler() (in module girder_large_image) (in module girder_large_image_annotation) methodcache() (in module large_image.cache_util) (in module large_image.cache_util.cache) mimetype (large_image.tilesource.utilities.ImageBytes property) mimeTypes (large_image.tilesource.base.TileSource attribute) (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.BioformatsFileTileSource attribute) (large_image_source_deepzoom.DeepzoomFileTileSource attribute) (large_image_source_dicom.DICOMFileTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.MultiFileTileSource attribute) (large_image_source_nd2.ND2FileTileSource attribute) (large_image_source_ometiff.OMETiffFileTileSource attribute) (large_image_source_openjpeg.OpenjpegFileTileSource attribute) (large_image_source_openslide.OpenslideFileTileSource attribute) (large_image_source_pil.PILFileTileSource attribute) (large_image_source_tiff.TiffFileTileSource attribute) (large_image_source_tifffile.TifffileFileTileSource attribute) (large_image_source_vips.VipsFileTileSource attribute) (large_image_source_zarr.ZarrFileTileSource attribute) mimeTypesWithAdjacentFiles (girder_large_image.girder_tilesource.GirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) minHeight (large_image_source_vips.VipsFileTileSource property) minimizeCaching() (in module large_image.config) minWidth (large_image_source_vips.VipsFileTileSource property) mm_x (large_image_source_vips.VipsFileTileSource property) (large_image_source_zarr.ZarrFileTileSource property) mm_y (large_image_source_vips.VipsFileTileSource property) (large_image_source_zarr.ZarrFileTileSource property) modify_tiff_before_write() (in module large_image_converter.format_aperio) modify_tiled_ifd() (in module large_image_converter.format_aperio) modify_vips_image_before_output() (in module large_image_converter.format_aperio) module girder_large_image girder_large_image.constants girder_large_image.girder_tilesource girder_large_image.loadmodelcache girder_large_image.models girder_large_image.models.image_item girder_large_image.rest girder_large_image.rest.item_meta girder_large_image.rest.large_image_resource girder_large_image.rest.tiles girder_large_image_annotation girder_large_image_annotation.constants girder_large_image_annotation.handlers girder_large_image_annotation.models girder_large_image_annotation.models.annotation girder_large_image_annotation.models.annotationelement girder_large_image_annotation.rest girder_large_image_annotation.rest.annotation girder_large_image_annotation.utils large_image large_image.cache_util large_image.cache_util.base large_image.cache_util.cache large_image.cache_util.cachefactory large_image.cache_util.memcache large_image.cache_util.rediscache large_image.config large_image.constants large_image.exceptions large_image.tilesource large_image.tilesource.base large_image.tilesource.geo large_image.tilesource.jupyter large_image.tilesource.resample large_image.tilesource.stylefuncs large_image.tilesource.tiledict large_image.tilesource.tileiterator large_image.tilesource.utilities large_image_converter large_image_converter.format_aperio large_image_source_bioformats large_image_source_bioformats.girder_source large_image_source_deepzoom large_image_source_deepzoom.girder_source large_image_source_dicom large_image_source_dicom.assetstore large_image_source_dicom.assetstore.dicomweb_assetstore_adapter large_image_source_dicom.assetstore.rest large_image_source_dicom.dicom_metadata large_image_source_dicom.dicom_tags large_image_source_dicom.dicomweb_utils large_image_source_dicom.girder_plugin large_image_source_dicom.girder_source large_image_source_dummy large_image_source_gdal large_image_source_gdal.girder_source large_image_source_mapnik large_image_source_mapnik.girder_source large_image_source_multi large_image_source_multi.girder_source large_image_source_nd2 large_image_source_nd2.girder_source large_image_source_ometiff large_image_source_ometiff.girder_source large_image_source_openjpeg large_image_source_openjpeg.girder_source large_image_source_openslide large_image_source_openslide.girder_source large_image_source_pil large_image_source_pil.girder_source large_image_source_rasterio large_image_source_rasterio.girder_source large_image_source_test large_image_source_tiff large_image_source_tiff.exceptions large_image_source_tiff.girder_source large_image_source_tiff.tiff_reader large_image_source_tifffile large_image_source_tifffile.girder_source large_image_source_vips large_image_source_vips.girder_source large_image_source_zarr large_image_source_zarr.girder_source large_image_tasks large_image_tasks.tasks

MultiFileTileSource (class in large_image_source_multi) MultiGirderTileSource (class in large_image_source_multi.girder_source) multilinestringType() (girder_large_image_annotation.utils.GeoJSONAnnotation method) multipointType() (girder_large_image_annotation.utils.GeoJSONAnnotation method) multipolygonType() (girder_large_image_annotation.utils.GeoJSONAnnotation method)

N

name (large_image.tilesource.base.TileSource attribute) (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.BioformatsFileTileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.DeepzoomFileTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.DICOMFileTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_dummy.DummyTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_multi.MultiFileTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_nd2.ND2FileTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_ometiff.OMETiffFileTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openjpeg.OpenjpegFileTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_openslide.OpenslideFileTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_pil.PILFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tiff.TiffFileTileSource attribute) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_tifffile.TifffileFileTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_vips.VipsFileTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) (large_image_source_zarr.ZarrFileTileSource attribute)

NAMED (large_image.constants.SourcePriority attribute) namedCaches (large_image.cache_util.cache.LruCacheMetaclass attribute) (large_image.cache_util.LruCacheMetaclass attribute) namedtupleToDict() (in module large_image_source_nd2) nameMatches (large_image.tilesource.base.TileSource attribute) (large_image.tilesource.TileSource attribute) (large_image_source_dicom.DICOMFileTileSource attribute) ND2FileTileSource (class in large_image_source_nd2) ND2GirderTileSource (class in large_image_source_nd2.girder_source) nearPowerOfTwo() (in module large_image.tilesource) (in module large_image.tilesource.utilities) new() (in module large_image.tilesource) (in module large_image_source_vips) (in module large_image_source_zarr) newPriority (large_image.tilesource.base.TileSource attribute) (large_image.tilesource.TileSource attribute) (large_image_source_vips.VipsFileTileSource attribute) (large_image_source_zarr.ZarrFileTileSource attribute) NOVICE (girder_large_image_annotation.models.annotation.Annotation.Skill attribute) NP_MAX (large_image.tilesource.resample.ResampleMethod attribute) NP_MAX_COLOR (large_image.tilesource.resample.ResampleMethod attribute) NP_MEAN (large_image.tilesource.resample.ResampleMethod attribute) NP_MEDIAN (large_image.tilesource.resample.ResampleMethod attribute) NP_MIN (large_image.tilesource.resample.ResampleMethod attribute) NP_MIN_COLOR (large_image.tilesource.resample.ResampleMethod attribute) NP_MODE (large_image.tilesource.resample.ResampleMethod attribute) NP_NEAREST (large_image.tilesource.resample.ResampleMethod attribute) numberInstance (girder_large_image_annotation.models.annotation.Annotation attribute) numpyResize() (in module large_image.tilesource.resample)

O

OMETiffFileTileSource (class in large_image_source_ometiff) OMETiffGirderTileSource (class in large_image_source_ometiff.girder_source) open() (in module large_image.tilesource) (in module large_image_source_bioformats) (in module large_image_source_deepzoom) (in module large_image_source_dicom) (in module large_image_source_dummy) (in module large_image_source_gdal) (in module large_image_source_mapnik) (in module large_image_source_multi) (in module large_image_source_nd2) (in module large_image_source_ometiff) (in module large_image_source_openjpeg) (in module large_image_source_openslide) (in module large_image_source_pil) (in module large_image_source_rasterio) (in module large_image_source_test) (in module large_image_source_tiff) (in module large_image_source_tifffile) (in module large_image_source_vips) (in module large_image_source_zarr)

OpenjpegFileTileSource (class in large_image_source_openjpeg) OpenjpegGirderTileSource (class in large_image_source_openjpeg.girder_source) OpenslideFileTileSource (class in large_image_source_openslide) OpenslideGirderTileSource (class in large_image_source_openslide.girder_source) origin (large_image_source_vips.VipsFileTileSource property) overlaySchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

P

parse_image_description() (large_image_source_tiff.tiff_reader.TiledTiffDirectory method) patchLibtiff() (in module large_image_source_tiff.tiff_reader) patchMount() (in module girder_large_image) pickAvailableCache() (in module large_image.cache_util) (in module large_image.cache_util.cachefactory) PIL_BICUBIC (large_image.tilesource.resample.ResampleMethod attribute) PIL_BILINEAR (large_image.tilesource.resample.ResampleMethod attribute) PIL_BOX (large_image.tilesource.resample.ResampleMethod attribute) PIL_HAMMING (large_image.tilesource.resample.ResampleMethod attribute) PIL_LANCZOS (large_image.tilesource.resample.ResampleMethod attribute) PIL_MAX_ENUM (large_image.tilesource.resample.ResampleMethod attribute) PIL_NEAREST (large_image.tilesource.resample.ResampleMethod attribute) PILFileTileSource (class in large_image_source_pil) PILGirderTileSource (class in large_image_source_pil.girder_source) pilResize() (in module large_image.tilesource.resample) pixelInfo (large_image_source_tiff.tiff_reader.TiledTiffDirectory property) pixelmapCategorySchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) pixelmapSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) pixelToProjection() (large_image.tilesource.geo.GDALBaseFileTileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) PlottableItemData (class in girder_large_image_annotation.utils) PluginSettings (class in girder_large_image.constants) pointShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

pointType() (girder_large_image_annotation.utils.AnnotationGeoJSON method) (girder_large_image_annotation.utils.GeoJSONAnnotation method) polygonType() (girder_large_image_annotation.utils.GeoJSONAnnotation method) polylineShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) polylineType() (girder_large_image_annotation.utils.AnnotationGeoJSON method) (girder_large_image_annotation.utils.GeoJSONAnnotation method) PREFERRED (large_image.constants.SourcePriority attribute) prepareCopyItem() (in module girder_large_image) process_annotations() (in module girder_large_image_annotation.handlers) projection (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) projectionOrigin (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) putYAMLConfigFile() (in module girder_large_image.rest)

R

rangeValueSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) RasterioFileTileSource (class in large_image_source_rasterio) RasterioGirderTileSource (class in large_image_source_rasterio.girder_source) recordSelector() (girder_large_image_annotation.utils.PlottableItemData static method) rectangleGridShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) rectangleShapeSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute) rectangleType() (girder_large_image_annotation.utils.AnnotationGeoJSON method) (girder_large_image_annotation.utils.GeoJSONAnnotation method) RedisCache (class in large_image.cache_util) (class in large_image.cache_util.rediscache) release() (large_image.tilesource.tiledict.LazyTileDict method) remove() (girder_large_image_annotation.models.annotation.Annotation method)

removeElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method) removeOldAnnotations() (girder_large_image_annotation.models.annotation.Annotation method) removeOldElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method) removeThumbnailFiles() (girder_large_image.models.image_item.ImageItem method) removeThumbnails() (in module girder_large_image) removeWithQuery() (girder_large_image_annotation.models.annotationelement.Annotationelement method) ResampleMethod (class in large_image.tilesource.resample) resolveAnnotationGirderIds() (in module girder_large_image_annotation.handlers) returnFolderAnnotations() (girder_large_image_annotation.rest.annotation.AnnotationResource method) revertAnnotationHistory() (girder_large_image_annotation.rest.annotation.AnnotationResource method) revertVersion() (girder_large_image_annotation.models.annotation.Annotation method) rotate() (girder_large_image_annotation.utils.AnnotationGeoJSON method)

S

save() (girder_large_image_annotation.models.annotation.Annotation method) saveElementAsFile() (girder_large_image_annotation.models.annotationelement.Annotationelement method) setAccessList() (girder_large_image_annotation.models.annotation.Annotation method) setConfig() (in module large_image.config) setContentHeaders() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter method) setFolderAnnotationAccess() (girder_large_image_annotation.rest.annotation.AnnotationResource method) setFormat() (large_image.tilesource.tiledict.LazyTileDict method) setMetadata() (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.rest.annotation.AnnotationResource method) sizeX (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) sizeY (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute)

sourceLevels (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) SourcePriority (class in large_image.constants) sourceSizeX (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) sourceSizeY (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) strhash() (in module large_image.cache_util) (in module large_image.cache_util.cache) style (large_image.tilesource.base.TileSource property) (large_image.tilesource.TileSource property)

T

task_imports() (large_image_tasks.LargeImageTasks method) TestTileSource (class in large_image_source_test) TiffError TifffileFileTileSource (class in large_image_source_tifffile) TifffileGirderTileSource (class in large_image_source_tifffile.girder_source) TiffFileTileSource (class in large_image_source_tiff) TiffGirderTileSource (class in large_image_source_tiff.girder_source) TileCacheConfigurationError TileCacheError TiledTiffDirectory (class in large_image_source_tiff.tiff_reader) tileFrames() (girder_large_image.models.image_item.ImageItem method) (girder_large_image.rest.tiles.TilesItemResource method) (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) tileFramesQuadInfo() (girder_large_image.rest.tiles.TilesItemResource method) TileGeneralError, [1] TileGeneralException (in module large_image.exceptions) (in module large_image.tilesource) tileHeight (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tiff.tiff_reader.TiledTiffDirectory property) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) TileIterator (class in large_image.tilesource.tileiterator) tileIterator() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method)

tileIteratorAtAnotherScale() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method) TilesItemResource (class in girder_large_image.rest.tiles) TileSource (class in large_image.tilesource) (class in large_image.tilesource.base) tileSource() (girder_large_image.models.image_item.ImageItem method) TileSourceAssetstoreError, [1] TileSourceAssetstoreException (in module large_image.exceptions) (in module large_image.tilesource) TileSourceError, [1] TileSourceException (in module large_image.exceptions) (in module large_image.tilesource) TileSourceFileNotFoundError, [1] TileSourceInefficientError TileSourceMalformedError TileSourceXYZRangeError tileWidth (large_image.tilesource.TileSource attribute) (large_image_source_bioformats.girder_source.BioformatsGirderTileSource attribute) (large_image_source_deepzoom.girder_source.DeepzoomGirderTileSource attribute) (large_image_source_dicom.girder_source.DICOMGirderTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_multi.girder_source.MultiGirderTileSource attribute) (large_image_source_nd2.girder_source.ND2GirderTileSource attribute) (large_image_source_ometiff.girder_source.OMETiffGirderTileSource attribute) (large_image_source_openjpeg.girder_source.OpenjpegGirderTileSource attribute) (large_image_source_openslide.girder_source.OpenslideGirderTileSource attribute) (large_image_source_pil.girder_source.PILGirderTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute) (large_image_source_test.TestTileSource attribute) (large_image_source_tiff.girder_source.TiffGirderTileSource attribute) (large_image_source_tiff.tiff_reader.TiledTiffDirectory property) (large_image_source_tifffile.girder_source.TifffileGirderTileSource attribute) (large_image_source_vips.girder_source.VipsGirderTileSource attribute) (large_image_source_zarr.girder_source.ZarrGirderTileSource attribute) to_map() (large_image.tilesource.jupyter.Map method) toNativePixelCoordinates() (large_image.tilesource.geo.GDALBaseFileTileSource method) (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) total_memory() (in module large_image.config) transformArray (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

U

unbindGirderEventsByHandlerName() (in module girder_large_image) unitsAcrossLevel0 (large_image.tilesource.geo.GDALBaseFileTileSource attribute) (large_image_source_gdal.GDALFileTileSource attribute) (large_image_source_gdal.girder_source.GDALGirderTileSource attribute) (large_image_source_mapnik.girder_source.MapnikGirderTileSource attribute) (large_image_source_mapnik.MapnikFileTileSource attribute) (large_image_source_rasterio.girder_source.RasterioGirderTileSource attribute) (large_image_source_rasterio.RasterioFileTileSource attribute)

update_frame() (large_image.tilesource.jupyter.Map method) updateAnnotation() (girder_large_image_annotation.models.annotation.Annotation method) (girder_large_image_annotation.rest.annotation.AnnotationResource method) updateAnnotationAccess() (girder_large_image_annotation.rest.annotation.AnnotationResource method) updateElementChunk() (girder_large_image_annotation.models.annotationelement.Annotationelement method) updateElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method) updateMetadataKey() (girder_large_image.rest.item_meta.InternalMetadataItemResource method) userSchema (girder_large_image_annotation.models.annotation.AnnotationSchema attribute)

V

validate() (girder_large_image_annotation.models.annotation.Annotation method) validateBoolean() (in module girder_large_image) (in module girder_large_image_annotation) validateBooleanOrAll() (in module girder_large_image) validateBooleanOrICCIntent() (in module girder_large_image) validateCOG() (large_image_source_gdal.GDALFileTileSource method) (large_image_source_rasterio.RasterioFileTileSource method) validateDefaultViewer() (in module girder_large_image) validateDictOrJSON() (in module girder_large_image)

validateFolder() (in module girder_large_image) validateInfo() (large_image_source_dicom.assetstore.dicomweb_assetstore_adapter.DICOMwebAssetstoreAdapter static method) (large_image_source_dicom.assetstore.DICOMwebAssetstoreAdapter static method) validateNonnegativeInteger() (in module girder_large_image) ValidationTiffError validatorAnnotation (girder_large_image_annotation.models.annotation.Annotation attribute) validatorAnnotationElement (girder_large_image_annotation.models.annotation.Annotation attribute) versionList() (girder_large_image_annotation.models.annotation.Annotation method) VipsFileTileSource (class in large_image_source_vips) VipsGirderTileSource (class in large_image_source_vips.girder_source)

W

wrapKey() (large_image.tilesource.base.TileSource method) (large_image.tilesource.TileSource method)

write() (large_image_source_vips.VipsFileTileSource method) (large_image_source_zarr.ZarrFileTileSource method)

Y

yamlConfigFile() (in module girder_large_image)

yamlConfigFileWrite() (in module girder_large_image) yieldElements() (girder_large_image_annotation.models.annotationelement.Annotationelement method)

Z

ZarrFileTileSource (class in large_image_source_zarr)

ZarrGirderTileSource (class in large_image_source_zarr.girder_source)